Publications

Found 85 results
[ Author(Desc)] Title Type Year
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J
D.R. Jacobson, and O.A. Saleh. "Magnetic tweezers force calibration for molecules that exhibit conformational switching." Review of Scientific Instruments 87 (2016): 094302.
D.R. Jacobson, and O.A. Saleh. "Counting the ions surrounding nucleic acids." Nucleic Acids Research (2016). (628.74 KB)
D.R. Jacobson, and O.A. Saleh. "Quantifying the ion atmosphere of unfolded, single-stranded nucleic acids using equilibrium dialysis and single-molecule methods." Nucleic Acids Research 44 (2016): 3763. (652.83 KB)
D.R. Jacobson, D.B. McIntosh, M.J. Stevens, M. Rubinstein, and O.A. Saleh. "Single-stranded nucleic acid elasticity arises from internal electrostatic tension." Proceedings of the National Academy of Sciences 114 (2017): 5095-5100. (761.58 KB)
Jeon, B.J., D.T. Nguyen, G.R. Abraham, N. Conrad, D.K. Fygenson, and O.A. Saleh. "Salt-dependent properties of a coacervate-like, self-assembled DNA liquid." Soft Matter (2018).
Jeon, Byoung-jin, Dan T. Nguyen, and Omar A. Saleh. "Sequence-Controlled Adhesion and Microemulsification in a Two-Phase System of DNA Liquid Droplets." The Journal of Physical Chemistry B (2020).
K
D.L. Kaplan, O.A. Saleh, and N. Ribeck. "Single-molecule and bulk approaches to the DnaB replication fork helicase." Frontiers in Bioscience (Landmark Edition) 18 (2013): 224.
B. Keimer, D. Casa, V. Kiryukhin, O.A. Saleh, J.P. Hill, Y. Tomioka, and Y. Tokura. "X-Ray effects in charge-ordered manganites: A magnetic mechanism of persistent photoconductivity." Materials Science and Engineering: B 63 (1999): 30-35.
K. Kim, and O.A. Saleh. "A high-resolution magnetic tweezer for single-molecule measurements." Nucleic Acids Research 37 (2009): e136. (1.75 MB)
K. Kim, and O.A. Saleh. "Stabilizing method for reflection interference contrast microscopy." Applied Optics 47 (2008): 2070-2075.
Koren, Gil, Sagi Meir, Lennard Holschuh, Haydyn D. T. Mertens, Tamara Ehm, Nadav Yahalom, Adina Golombek, Tal Schwartz, Dmitri I. Svergun, Omar A. Saleh et al. "Intramolecular structural heterogeneity altered by long-range contacts in an intrinsically disordered protein." Proceedings of the National Academy of Sciences 120 (2023): e2220180120.
Kravikass, Mathar, Gil Koren, Omar A. Saleh, and Roy Beck. "From isolated polyelectrolytes to star-like assemblies: the role of sequence heterogeneity on the statistical structure of the intrinsically disordered neurofilament-low tail domain." Eur Phys J E Soft Matter 47, no. 2 (2024): 13.
L
J. Landy, D.B. McIntosh, O.A. Saleh, and P. Pincus. "Ionic excesses and entropies in mean-field screening models." Soft Matter 8 (2012): 9368-9375.
J. Landy, D.B. McIntosh, and O.A. Saleh. "Quantifying screening ion excesses in single-molecule force-extension experiments." Physical Review Letters 109 (2012): 048301. (347.62 KB)
B.M. Lansdorp, S.J. Tabrizi, A. Dittmore, and O.A. Saleh. "A high-speed magnetic tweezer beyond 10,000 frames per second." Review of Scientific Instruments 84 (2013): 044301. (1.19 MB)
B.M. Lansdorp, and O.A. Saleh. "Power spectrum and Allan variance methods for calibrating single-molecule video-tracking instruments." Review of Scientific Instruments 83 (2012): 025115. (851.98 KB)
J. Lin, F. Persson, J. Fritzsche, J.O. Tegenfeldt, and O.A. Saleh. "Bandpass filtering of DNA elastic modes using confinement and tension." Biophysical Journal 102 (2012): 96-100.
T. Lionnet, D. Dawid, S. Bigot, F.X. Barre, O.A. Saleh, F. Heslot, J.F. Allemand, D. Bensimon, and V. Croquette. "DNA mechanics as a tool to probe helicase and translocase activity." Nucleic Acids Research 34 (2006): 4232-4244. (841.85 KB)
T. Lionnet, J.F. Allemand, A. Revyakin, T.R. Strick, O.A. Saleh, D. Bensimon, and V. Croquette. "Single-molecule studies using magnetic traps." In Single-Molecule Techniques: A Laboratory Manual. Cold Spring Harbor Laboratory Press, 2008.
M
M. Manosas, A. Meglio, M.M. Spiering, F. Ding, S.J. Benkovic, F.X. Barre, O.A. Saleh, J.F. Allemand, D. Bensimon, and V. Croquette. "Magnetic tweezers for the study of DNA tracking motors." Methods in Enzymology 475 (2010): 297-320. (1.12 MB)
D.B. McIntosh, G. Duggan, Q. Gouil, and O.A. Saleh. "Sequence-dependent elasticity and electrostatics of single-stranded DNA: Signatures of base-stacking." Biophysical journal 106 (2014): 659-666.
D.B. McIntosh, and O.A. Saleh. "Salt species-dependent electrostatic effects on ssDNA elasticity." Macromolecules 44 (2011): 2328-2333.
D.B. McIntosh, N. Ribeck, and O.A. Saleh. "Detailed scaling analysis of low-force polyelectrolyte elasticity." Physical Review E 80 (2009): 041803. (193.93 KB)
Morgan, Ian L., Ram Avinery, Gil Rahamim, R. Beck, and Omar A. Saleh. "Glassy dynamics and memory effects in an intrinsically-disordered protein construct." Physical Review Letters 125 (2020).
Morgan, Ian L., and Omar A. Saleh. "Tweezepy: A Python package for calibrating forces in single-molecule video-tracking experiments." PLoS One 16, no. 12 (2021): e0262028.

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